J3_11IQ_013
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11IQ_013 not in the Motif Atlas
- Homologous match to J3_9PN5_040
- Geometric discrepancy: 0.1319
- The information below is about J3_9PN5_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.6
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
11IQ|1|18|U|1350
11IQ|1|18|G|1351
*
11IQ|1|18|U|1360
11IQ|1|18|G|1361
11IQ|1|18|U|1362
11IQ|1|18|C|1363
*
11IQ|1|18|G|1375
11IQ|1|18|A|1376
11IQ|1|18|U|1377
11IQ|1|18|A|1378
11IQ|1|18|A|1379
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain BB
- 40S_SA_C domain-containing protein
- Chain JJ
- 40S ribosomal protein S17
- Chain S2
- 40S ribosomal protein S2
Coloring options: