J3_11JJ_012
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 11JJ|1|18|A|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_012 not in the Motif Atlas
- Homologous match to J3_9PN5_040
- Geometric discrepancy: 0.1466
- The information below is about J3_9PN5_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.6
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|18|U|1350
11JJ|1|18|G|1351
*
11JJ|1|18|U|1360
11JJ|1|18|G|1361
11JJ|1|18|U|1362
11JJ|1|18|C|1363
*
11JJ|1|18|G|1375
11JJ|1|18|A|1376
11JJ|1|18|U|1377
11JJ|1|18|A|1378
11JJ|1|18|A|1379
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain BB
- 40S_SA_C domain-containing protein
- Chain RS
- 40S ribosomal protein S17
- Chain S2
- 40S ribosomal protein S2
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