J3_11JJ_023
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAU*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_023 not in the Motif Atlas
- Geometric match to J3_5D8H_001
- Geometric discrepancy: 0.1911
- The information below is about J3_5D8H_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.2
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|28|G|1969
11JJ|1|28|A|1970
11JJ|1|28|U|1971
*
11JJ|1|28|G|1995
11JJ|1|28|C|1996
11JJ|1|28|U|1997
11JJ|1|28|A|1998
11JJ|1|28|A|1999
11JJ|1|28|G|2000
11JJ|1|28|G|2001
*
11JJ|1|28|C|2016
11JJ|1|28|A|2017
11JJ|1|28|C|2018
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain s
- 60S acidic ribosomal protein P0
- Chain t
- uL11
Coloring options: