J3_1J5A_008

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUUG*CAUUAAAG

Length

16 nucleotides

Bulged bases

1J5A|1|A|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_008 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2529

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1J5A|1|A|C|2496
1J5A|1|A|A|2497
1J5A|1|A|U|2498
1J5A|1|A|C|2499
*
1J5A|1|A|G|2524
1J5A|1|A|U|2525
1J5A|1|A|U|2526
1J5A|1|A|G|2527
*
1J5A|1|A|C|2539
1J5A|1|A|A|2540
1J5A|1|A|U|2541
1J5A|1|A|U|2542
1J5A|1|A|A|2543
1J5A|1|A|A|2544
1J5A|1|A|A|2545
1J5A|1|A|G|2546

Current chains

Chain A

23S RRNA

Nearby chains