J3_1NKW_005

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1NKW|1|0|C|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NKW_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2986

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1NKW|1|0|C|1319
1NKW|1|0|A|1320
1NKW|1|0|A|1321
1NKW|1|0|G|1322
*
1NKW|1|0|C|1621
1NKW|1|0|G|1622
1NKW|1|0|C|1623
1NKW|1|0|A|1624
1NKW|1|0|A|1625
1NKW|1|0|A|1626
1NKW|1|0|C|1627
*
1NKW|1|0|G|1636
1NKW|1|0|U|1637
1NKW|1|0|G|1638

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34