J3_1NKW_009
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCAG
- Length
- 15 nucleotides
- Bulged bases
- 1NKW|1|9|C|14, 1NKW|1|9|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NKW_009 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2732
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1NKW|1|9|C|12
1NKW|1|9|C|13
1NKW|1|9|C|14
1NKW|1|9|A|15
1NKW|1|9|U|16
1NKW|1|9|A|17
1NKW|1|9|G|18
*
1NKW|1|9|C|70
1NKW|1|9|G|71
1NKW|1|9|C|72
*
1NKW|1|9|G|109
1NKW|1|9|U|110
1NKW|1|9|C|111
1NKW|1|9|A|112
1NKW|1|9|G|113
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L18
- Chain T
- general stress protein CTC
- Chain U
- 50S ribosomal protein L27
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