J3_1NKW_013
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 1NKW|1|0|G|514, 1NKW|1|0|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1NKW_013 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.3319
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1NKW|1|0|G|30
1NKW|1|0|C|31
*
1NKW|1|0|G|485
1NKW|1|0|U|486
1NKW|1|0|G|487
1NKW|1|0|A|488
1NKW|1|0|A|489
1NKW|1|0|A|490
1NKW|1|0|A|491
1NKW|1|0|G|492
1NKW|1|0|A|493
1NKW|1|0|A|494
1NKW|1|0|C|495
*
1NKW|1|0|G|506
1NKW|1|0|A|507
1NKW|1|0|G|508
1NKW|1|0|U|509
1NKW|1|0|G|510
1NKW|1|0|A|511
1NKW|1|0|A|512
1NKW|1|0|A|513
1NKW|1|0|G|514
1NKW|1|0|A|515
1NKW|1|0|G|516
1NKW|1|0|A|517
1NKW|1|0|A|518
1NKW|1|0|C|519
1NKW|1|0|C|520
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L22
- Chain S
- 50S ribosomal protein L24
Coloring options: