J3_1NWY_005

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1NWY|1|0|C|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NWY_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2969

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1NWY|1|0|C|1319
1NWY|1|0|A|1320
1NWY|1|0|A|1321
1NWY|1|0|G|1322
*
1NWY|1|0|C|1621
1NWY|1|0|G|1622
1NWY|1|0|C|1623
1NWY|1|0|A|1624
1NWY|1|0|A|1625
1NWY|1|0|A|1626
1NWY|1|0|C|1627
*
1NWY|1|0|G|1636
1NWY|1|0|U|1637
1NWY|1|0|G|1638

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34