J3_1VX6_005

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

1VX6|1|A|A|936, 1VX6|1|A|G|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_005 not in the Motif Atlas

Geometric match to J3_8C3A_003

Geometric discrepancy: 0.0967

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|U|933
1VX6|1|A|G|934
1VX6|1|A|A|935
1VX6|1|A|A|936
1VX6|1|A|C|937
1VX6|1|A|U|938
1VX6|1|A|A|939
*
1VX6|1|A|U|1024
1VX6|1|A|A|1025
1VX6|1|A|G|1026
*
1VX6|1|A|C|1042
1VX6|1|A|G|1043
1VX6|1|A|A|1044
1VX6|1|A|A|1045

Current chains

Chain A

28S ribosomal RNA

Nearby chains