J3_1VX6_007

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

1VX6|1|A|A|1631, 1VX6|1|A|U|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_007 not in the Motif Atlas

Geometric match to J3_5TBW_008

Geometric discrepancy: 0.0979

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

1VX6|1|A|U|1628
1VX6|1|A|G|1629
1VX6|1|A|A|1630
1VX6|1|A|A|1631
1VX6|1|A|G|1632
1VX6|1|A|U|1633
1VX6|1|A|G|1634
*
1VX6|1|A|C|2124
1VX6|1|A|A|2125
1VX6|1|A|A|2126
*
1VX6|1|A|U|2138
1VX6|1|A|C|2139
1VX6|1|A|U|2140
1VX6|1|A|G|2141

Current chains

Chain A

28S ribosomal RNA

Nearby chains