J3_1VX6_008

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CAACAAC*GUC

Length

14 nucleotides

Bulged bases

1VX6|1|A|C|2107, 1VX6|1|A|A|2108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_008 not in the Motif Atlas

Geometric match to J3_8C3A_007

Geometric discrepancy: 0.1113

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1VX6|1|A|G|1637
1VX6|1|A|A|1638
1VX6|1|A|A|1639
1VX6|1|A|G|1640
*
1VX6|1|A|C|2104
1VX6|1|A|A|2105
1VX6|1|A|A|2106
1VX6|1|A|C|2107
1VX6|1|A|A|2108
1VX6|1|A|A|2109
1VX6|1|A|C|2110
*
1VX6|1|A|G|2119
1VX6|1|A|U|2120
1VX6|1|A|C|2121

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA