J3_1VX6_014

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAC*GAAAAG

Length

12 nucleotides

Bulged bases

1VX6|1|A|A|3042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX6_014 not in the Motif Atlas

Geometric match to J3_5TBW_013

Geometric discrepancy: 0.1004

The information below is about J3_5TBW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|C|3003
1VX6|1|A|U|3004
1VX6|1|A|C|3005
*
1VX6|1|A|G|3029
1VX6|1|A|A|3030
1VX6|1|A|C|3031
*
1VX6|1|A|G|3040
1VX6|1|A|A|3041
1VX6|1|A|A|3042
1VX6|1|A|A|3043
1VX6|1|A|A|3044
1VX6|1|A|G|3045

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA