J3_1VY7_057

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

1VY7|1|AA|U|1212, 1VY7|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VY7_057 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1543

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1VY7|1|AA|C|990
1VY7|1|AA|U|991
1VY7|1|AA|U|992
1VY7|1|AA|G|993
1VY7|1|AA|A|994
1VY7|1|AA|C|995
1VY7|1|AA|A|996
1VY7|1|AA|U|997
*
1VY7|1|AA|A|1044
1VY7|1|AA|C|1045
1VY7|1|AA|A|1046
1VY7|1|AA|G|1047
*
1VY7|1|AA|C|1210
1VY7|1|AA|U|1211
1VY7|1|AA|U|1212
1VY7|1|AA|A|1213
1VY7|1|AA|C|1214
1VY7|1|AA|G|1215

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14 type Z