J3_1X8W_006

3D structure

PDB id

1X8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAG*UGGC*GGUAUG

Length

14 nucleotides

Bulged bases

1X8W|1|D|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1X8W_006 not in the Motif Atlas

Geometric match to J3_1GID_002

Geometric discrepancy: 0.1915

The information below is about J3_1GID_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23680.1

Basepair signature

cWW-F-tHS-F-tHS-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1X8W|1|D|C|138
1X8W|1|D|A|139
1X8W|1|D|A|140
1X8W|1|D|G|141
*
1X8W|1|D|U|162
1X8W|1|D|G|163
1X8W|1|D|G|164
1X8W|1|D|C|165
*
1X8W|1|D|G|175
1X8W|1|D|G|176
1X8W|1|D|U|177
1X8W|1|D|A|178
1X8W|1|D|U|179
1X8W|1|D|G|180

Current chains

Chain D

Tetrahymena ribozyme RNA

Nearby chains