J3_1Y39_002

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Y39_002 not in the Motif Atlas

Geometric match to J3_6PRV_001

Geometric discrepancy: 0.1244

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

1Y39|1|D|G|305
1Y39|1|D|G|306
1Y39|1|D|A|307
*
1Y39|1|D|U|331
1Y39|1|D|U|332
1Y39|1|D|U|333
1Y39|1|D|A|334
1Y39|1|D|A|335
1Y39|1|D|A|336
1Y39|1|D|G|337
*
1Y39|1|D|C|352
1Y39|1|D|A|353
1Y39|1|D|C|354

Current chains

Chain D

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains

Chain A

50S ribosomal protein L11

Chain B

50S ribosomal protein L11

Chain C

Large subunit ribosomal RNA; LSU rRNA