J3_1YJW_001

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAC*GUGUCAG*CAG

Length

15 nucleotides

Bulged bases

1YJW|1|0|A|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJW_001 not in the Motif Atlas

Homologous match to J3_4V9F_001

Geometric discrepancy: 0.0532

The information below is about J3_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_96248.1

Basepair signature

cWW-tHW-F-tHS-cSS-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

1YJW|1|0|C|240
1YJW|1|0|A|241
1YJW|1|0|A|242
1YJW|1|0|A|243
1YJW|1|0|C|244
*
1YJW|1|0|G|267
1YJW|1|0|U|268
1YJW|1|0|G|269
1YJW|1|0|U|270
1YJW|1|0|C|271
1YJW|1|0|A|272
1YJW|1|0|G|273
*
1YJW|1|0|C|377
1YJW|1|0|A|378
1YJW|1|0|G|379

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L7AE

Chain M

50S RIBOSOMAL PROTEIN L15E