J3_1Z58_026

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

1Z58|1|2|A|2497, 1Z58|1|2|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Z58_026 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2454

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

1Z58|1|2|C|2496
1Z58|1|2|A|2497
1Z58|1|2|U|2498
1Z58|1|2|C|2499
*
1Z58|1|2|G|2524
1Z58|1|2|U|2525
1Z58|1|2|U|2526
*
1Z58|1|2|A|2540
1Z58|1|2|U|2541
1Z58|1|2|U|2542
1Z58|1|2|A|2543
1Z58|1|2|A|2544
1Z58|1|2|A|2545
1Z58|1|2|G|2546

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains