J3_23WI_024
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 23WI|1|a|U|871, 23WI|1|a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_024 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.2281
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
23WI|1|a|C|826
23WI|1|a|U|827
23WI|1|a|U|828
23WI|1|a|G|829
*
23WI|1|a|C|857
23WI|1|a|G|858
23WI|1|a|G|859
23WI|1|a|A|860
23WI|1|a|G|861
*
23WI|1|a|C|868
23WI|1|a|G|869
23WI|1|a|U|870
23WI|1|a|U|871
23WI|1|a|A|872
23WI|1|a|A|873
23WI|1|a|G|874
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain b
- Small ribosomal subunit protein uS2
- Chain h
- Small ribosomal subunit protein uS8
- Chain u
- Small ribosomal subunit protein bS21
Coloring options: