J3_23WI_030
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_030 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1587
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
23WI|1|a|C|1063
23WI|1|a|G|1064
23WI|1|a|U|1065
23WI|1|a|C|1066
23WI|1|a|A|1067
23WI|1|a|G|1068
*
23WI|1|a|C|1107
23WI|1|a|G|1108
23WI|1|a|C|1109
23WI|1|a|A|1110
23WI|1|a|A|1111
23WI|1|a|C|1112
23WI|1|a|C|1113
*
23WI|1|a|G|1187
23WI|1|a|A|1188
23WI|1|a|U|1189
23WI|1|a|G|1190
23WI|1|a|A|1191
23WI|1|a|C|1192
23WI|1|a|G|1193
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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