J3_28ZX_013

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*(PSU)GUC*GAUAA

Length

11 nucleotides

Bulged bases

28ZX|1|S2|A|1378

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|U|1350
28ZX|1|S2|G|1351
*
28ZX|1|S2|PSU|1360
28ZX|1|S2|G|1361
28ZX|1|S2|U|1362
28ZX|1|S2|C|1363
*
28ZX|1|S2|G|1375
28ZX|1|S2|A|1376
28ZX|1|S2|U|1377
28ZX|1|S2|A|1378
28ZX|1|S2|A|1379

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2

Chain SR

40S ribosomal protein S17