J3_2AAR_014

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2AAR|1|0|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_014 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1344

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2AAR|1|0|U|1357
2AAR|1|0|C|1358
2AAR|1|0|G|1359
2AAR|1|0|G|1360
2AAR|1|0|G|1361
2AAR|1|0|A|1362
2AAR|1|0|C|1363
*
2AAR|1|0|G|1394
2AAR|1|0|A|1395
2AAR|1|0|C|1396
2AAR|1|0|A|1397
2AAR|1|0|G|1398
*
2AAR|1|0|C|1415
2AAR|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains