J3_2J28_004

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2J28_004 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1622

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

2J28|1|B|G|1055
2J28|1|B|G|1056
2J28|1|B|A|1057
*
2J28|1|B|U|1081
2J28|1|B|U|1082
2J28|1|B|U|1083
2J28|1|B|A|1084
2J28|1|B|A|1085
2J28|1|B|A|1086
2J28|1|B|G|1087
*
2J28|1|B|C|1102
2J28|1|B|A|1103
2J28|1|B|C|1104

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain I

50S RIBOSOMAL PROTEIN L11