J3_2J28_005

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2J28_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0884

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2J28|1|B|C|1298
2J28|1|B|G|1299
2J28|1|B|G|1300
2J28|1|B|A|1301
2J28|1|B|A|1302
2J28|1|B|G|1303
*
2J28|1|B|C|1625
2J28|1|B|A|1626
2J28|1|B|G|1627
*
2J28|1|B|C|1639
2J28|1|B|A|1640
2J28|1|B|A|1641
2J28|1|B|G|1642

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains