J3_2J28_017

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2J28_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0781

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2J28|1|B|G|1424
2J28|1|B|G|1425
2J28|1|B|G|1426
2J28|1|B|A|1427
2J28|1|B|C|1428
2J28|1|B|G|1429
*
2J28|1|B|C|1564
2J28|1|B|C|1565
*
2J28|1|B|G|1568
2J28|1|B|A|1569
2J28|1|B|A|1570
2J28|1|B|A|1571
2J28|1|B|A|1572
2J28|1|B|G|1573
2J28|1|B|C|1574

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2