J3_2JL6_006

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_006 not in the Motif Atlas

Geometric match to J3_6PRV_001

Geometric discrepancy: 0.2425

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|G|1055
2JL6|1|A|G|1056
2JL6|1|A|A|1057
*
2JL6|1|A|U|1081
2JL6|1|A|U|1082
2JL6|1|A|U|1083
2JL6|1|A|A|1084
2JL6|1|A|A|1085
2JL6|1|A|A|1086
2JL6|1|A|G|1087
*
2JL6|1|A|C|1102
2JL6|1|A|A|1103
2JL6|1|A|C|1104

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain J

50S RIBOSOMAL PROTEIN L10

Chain K

50S RIBOSOMAL PROTEIN L11