J3_2JL6_014

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

2JL6|1|B|U|14, 2JL6|1|B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_014 not in the Motif Atlas

Geometric match to J3_8VTW_047

Geometric discrepancy: 0.1658

The information below is about J3_8VTW_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

2JL6|1|B|C|11
2JL6|1|B|C|12
2JL6|1|B|A|13
2JL6|1|B|U|14
2JL6|1|B|A|15
2JL6|1|B|G|16
*
2JL6|1|B|C|68
2JL6|1|B|G|69
*
2JL6|1|B|U|108
2JL6|1|B|C|109
2JL6|1|B|G|110

Current chains

Chain B

5S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L27

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Z

50S RIBOSOMAL PROTEIN L25