J3_2JQ7_008

3D structure

PDB id

2JQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton binding to the ribosomal L11-RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JQ7_008 not in the Motif Atlas

Geometric match to J3_5D8H_001

Geometric discrepancy: 0.2907

The information below is about J3_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

2JQ7|8|B|G|1055
2JQ7|8|B|G|1056
2JQ7|8|B|A|1057
*
2JQ7|8|B|U|1081
2JQ7|8|B|U|1082
2JQ7|8|B|U|1083
2JQ7|8|B|A|1084
2JQ7|8|B|A|1085
2JQ7|8|B|A|1086
2JQ7|8|B|G|1087
*
2JQ7|8|B|C|1102
2JQ7|8|B|A|1103
2JQ7|8|B|C|1104

Current chains

Chain B

RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11