J3_2OGO_009

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2OGO|1|0|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_009 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1352

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|C|2496
2OGO|1|0|A|2497
2OGO|1|0|U|2498
2OGO|1|0|C|2499
*
2OGO|1|0|G|2524
2OGO|1|0|U|2525
2OGO|1|0|U|2526
*
2OGO|1|0|A|2540
2OGO|1|0|U|2541
2OGO|1|0|U|2542
2OGO|1|0|A|2543
2OGO|1|0|A|2544
2OGO|1|0|A|2545
2OGO|1|0|G|2546

Current chains

Chain 0

23S ribosomal RNA

Nearby chains