J3_2OGO_011

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UC*GUUAAG*CAUCA

Length

13 nucleotides

Bulged bases

2OGO|1|0|U|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_011 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2094

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|U|2789
2OGO|1|0|C|2790
*
2OGO|1|0|G|2806
2OGO|1|0|U|2807
2OGO|1|0|U|2808
2OGO|1|0|A|2809
2OGO|1|0|A|2810
2OGO|1|0|G|2811
*
2OGO|1|0|C|2857
2OGO|1|0|A|2858
2OGO|1|0|U|2859
2OGO|1|0|C|2860
2OGO|1|0|A|2861

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3