J3_2OGO_020

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2OGO|1|0|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_020 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1616

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

2OGO|1|0|U|1357
2OGO|1|0|C|1358
2OGO|1|0|G|1359
2OGO|1|0|G|1360
2OGO|1|0|G|1361
2OGO|1|0|A|1362
2OGO|1|0|C|1363
*
2OGO|1|0|G|1394
2OGO|1|0|A|1395
2OGO|1|0|C|1396
2OGO|1|0|A|1397
2OGO|1|0|G|1398
*
2OGO|1|0|C|1415
2OGO|1|0|A|1416

Current chains

Chain 0

23S ribosomal RNA

Nearby chains