J3_2OGO_022

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

2OGO|1|0|U|2275, 2OGO|1|0|G|2313, 2OGO|1|0|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_022 not in the Motif Atlas

Homologous match to J3_7A0S_010

Geometric discrepancy: 0.4792

The information below is about J3_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|C|2274
2OGO|1|0|U|2275
2OGO|1|0|C|2276
*
2OGO|1|0|G|2300
2OGO|1|0|A|2301
2OGO|1|0|G|2302
*
2OGO|1|0|U|2311
2OGO|1|0|A|2312
2OGO|1|0|G|2313
2OGO|1|0|A|2314
2OGO|1|0|A|2315
2OGO|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains