J3_2QBG_005

3D structure

PDB id

2QBG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QBG_005 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.0795

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2QBG|1|B|C|1298
2QBG|1|B|G|1299
2QBG|1|B|G|1300
2QBG|1|B|A|1301
2QBG|1|B|A|1302
2QBG|1|B|G|1303
*
2QBG|1|B|C|1625
2QBG|1|B|A|1626
2QBG|1|B|G|1627
*
2QBG|1|B|C|1639
2QBG|1|B|A|1640
2QBG|1|B|A|1641
2QBG|1|B|G|1642

Current chains

Chain B

23S rRNA

Nearby chains