J3_2YKR_002

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUUGG*CCGGAG*CGUUAAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2YKR_002 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.5513

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

2YKR|1|A|C|826
2YKR|1|A|U|827
2YKR|1|A|U|828
2YKR|1|A|G|829
2YKR|1|A|G|830
*
2YKR|1|A|C|856
2YKR|1|A|C|857
2YKR|1|A|G|858
2YKR|1|A|G|859
2YKR|1|A|A|860
2YKR|1|A|G|861
*
2YKR|1|A|C|868
2YKR|1|A|G|869
2YKR|1|A|U|870
2YKR|1|A|U|871
2YKR|1|A|A|872
2YKR|1|A|A|873
2YKR|1|A|G|874

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain H

30S RIBOSOMAL PROTEIN S8