J3_2YKR_010
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 2YKR|1|A|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2YKR_010 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.4552
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
2YKR|1|A|C|1237
2YKR|1|A|A|1238
2YKR|1|A|A|1239
2YKR|1|A|U|1240
2YKR|1|A|G|1241
*
2YKR|1|A|C|1296
2YKR|1|A|G|1297
2YKR|1|A|U|1298
2YKR|1|A|A|1299
2YKR|1|A|G|1300
2YKR|1|A|U|1301
2YKR|1|A|C|1302
2YKR|1|A|C|1303
*
2YKR|1|A|G|1334
2YKR|1|A|U|1335
2YKR|1|A|C|1336
2YKR|1|A|G|1337
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain M
- 30S RIBOSOMAL PROTEIN S13
Coloring options: