3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3BBX_003 not in the Motif Atlas
Homologous match to J3_7A0S_005
Geometric discrepancy: 0.3928
The information below is about J3_7A0S_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

3BBX|1|B|C|698
3BBX|1|B|A|699
3BBX|1|B|G|700
*
3BBX|1|B|C|732
3BBX|1|B|G|733
3BBX|1|B|A|734
3BBX|1|B|A|735
3BBX|1|B|C|736
*
3BBX|1|B|G|760
3BBX|1|B|A|761
3BBX|1|B|U|762
3BBX|1|B|G|763

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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