J3_3BBX_004

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_004 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1719

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|G|1055
3BBX|1|B|G|1056
3BBX|1|B|A|1057
*
3BBX|1|B|U|1081
3BBX|1|B|U|1082
3BBX|1|B|U|1083
3BBX|1|B|A|1084
3BBX|1|B|A|1085
3BBX|1|B|A|1086
3BBX|1|B|G|1087
*
3BBX|1|B|C|1102
3BBX|1|B|A|1103
3BBX|1|B|C|1104

Current chains

Chain B

23S ribosomal RNA

Nearby chains