J3_3BBX_005
3D structure
- PDB id
- 3BBX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3BBX_005 not in the Motif Atlas
- Homologous match to J3_5J7L_041
- Geometric discrepancy: 0.0893
- The information below is about J3_5J7L_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3BBX|1|B|C|1298
3BBX|1|B|G|1299
3BBX|1|B|G|1300
3BBX|1|B|A|1301
3BBX|1|B|A|1302
3BBX|1|B|G|1303
*
3BBX|1|B|C|1625
3BBX|1|B|A|1626
3BBX|1|B|G|1627
*
3BBX|1|B|C|1639
3BBX|1|B|A|1640
3BBX|1|B|A|1641
3BBX|1|B|G|1642
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
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