J3_3BBX_017

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0783

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3BBX|1|B|G|1424
3BBX|1|B|G|1425
3BBX|1|B|G|1426
3BBX|1|B|A|1427
3BBX|1|B|C|1428
3BBX|1|B|G|1429
*
3BBX|1|B|C|1564
3BBX|1|B|C|1565
*
3BBX|1|B|G|1568
3BBX|1|B|A|1569
3BBX|1|B|A|1570
3BBX|1|B|A|1571
3BBX|1|B|A|1572
3BBX|1|B|G|1573
3BBX|1|B|C|1574

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2