J3_3J28_010

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J28_010 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.3298

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3J28|1|N|C|1237
3J28|1|N|A|1238
3J28|1|N|A|1239
3J28|1|N|U|1240
3J28|1|N|G|1241
*
3J28|1|N|C|1296
3J28|1|N|G|1297
3J28|1|N|U|1298
3J28|1|N|A|1299
3J28|1|N|G|1300
3J28|1|N|U|1301
3J28|1|N|C|1302
3J28|1|N|C|1303
*
3J28|1|N|G|1334
3J28|1|N|U|1335
3J28|1|N|C|1336
3J28|1|N|G|1337

Current chains

Chain N

16S rRNA

Nearby chains