J3_3J29_020

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

3J29|1|N|U|1240, 3J29|1|N|U|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J29_020 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3965

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3J29|1|N|C|1237
3J29|1|N|A|1238
3J29|1|N|A|1239
3J29|1|N|U|1240
3J29|1|N|G|1241
*
3J29|1|N|C|1296
3J29|1|N|G|1297
3J29|1|N|U|1298
3J29|1|N|A|1299
3J29|1|N|G|1300
3J29|1|N|U|1301
3J29|1|N|C|1302
3J29|1|N|C|1303
*
3J29|1|N|G|1334
3J29|1|N|U|1335
3J29|1|N|C|1336
3J29|1|N|G|1337

Current chains

Chain N

16S rRNA

Nearby chains