3D structure

PDB id
3J2A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
13.1 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
3J2A|1|N|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J2A_010 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.4522
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

3J2A|1|N|C|1237
3J2A|1|N|A|1238
3J2A|1|N|A|1239
3J2A|1|N|U|1240
3J2A|1|N|G|1241
*
3J2A|1|N|C|1296
3J2A|1|N|G|1297
3J2A|1|N|U|1298
3J2A|1|N|A|1299
3J2A|1|N|G|1300
3J2A|1|N|U|1301
3J2A|1|N|C|1302
3J2A|1|N|C|1303
*
3J2A|1|N|G|1334
3J2A|1|N|U|1335
3J2A|1|N|C|1336
3J2A|1|N|G|1337

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0874 s