J3_3J2B_002

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2B_002 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.263

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J2B|1|N|C|586
3J2B|1|N|G|587
3J2B|1|N|G|588
*
3J2B|1|N|C|651
3J2B|1|N|U|652
3J2B|1|N|U|653
3J2B|1|N|G|654
3J2B|1|N|A|655
*
3J2B|1|N|U|751
3J2B|1|N|G|752
3J2B|1|N|A|753
3J2B|1|N|C|754
3J2B|1|N|G|755

Current chains

Chain N

16S rRNA

Nearby chains