J3_3J2B_011

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UA*UACCGGUGG*CGG

Length

14 nucleotides

Bulged bases

3J2B|1|N|G|721, 3J2B|1|N|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2B_011 not in the Motif Atlas

Homologous match to J3_4LFB_012

Geometric discrepancy: 0.5937

The information below is about J3_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J2B|1|N|U|672
3J2B|1|N|A|673
*
3J2B|1|N|U|717
3J2B|1|N|A|718
3J2B|1|N|C|719
3J2B|1|N|C|720
3J2B|1|N|G|721
3J2B|1|N|G|722
3J2B|1|N|U|723
3J2B|1|N|G|724
3J2B|1|N|G|725
*
3J2B|1|N|C|732
3J2B|1|N|G|733
3J2B|1|N|G|734

Current chains

Chain N

16S rRNA

Nearby chains