J3_3J2C_007

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

3J2C|1|N|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2C_007 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.3244

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3J2C|1|N|G|46
3J2C|1|N|C|47
3J2C|1|N|C|48
3J2C|1|N|U|49
3J2C|1|N|A|50
3J2C|1|N|A|51
3J2C|1|N|C|52
*
3J2C|1|N|G|359
3J2C|1|N|G|360
3J2C|1|N|G|361
3J2C|1|N|G|362
3J2C|1|N|A|363
3J2C|1|N|A|364
3J2C|1|N|U|365
3J2C|1|N|A|366
3J2C|1|N|U|367
*
3J2C|1|N|A|393
3J2C|1|N|G|394
3J2C|1|N|C|395

Current chains

Chain N

16S rRNA body domain

Nearby chains

Chain O

Small subunit ribosomal RNA fragment; SSU rRNA fragment