J3_3J2H_015

3D structure

PDB id

3J2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

3J2H|1|N|U|871, 3J2H|1|N|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2H_015 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.5049

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

3J2H|1|N|C|826
3J2H|1|N|U|827
3J2H|1|N|U|828
3J2H|1|N|G|829
*
3J2H|1|N|C|857
3J2H|1|N|G|858
3J2H|1|N|G|859
3J2H|1|N|A|860
3J2H|1|N|G|861
*
3J2H|1|N|C|868
3J2H|1|N|G|869
3J2H|1|N|U|870
3J2H|1|N|U|871
3J2H|1|N|A|872
3J2H|1|N|A|873
3J2H|1|N|G|874

Current chains

Chain N

16S rRNA

Nearby chains