J3_3J6X_006
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1725
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|C|1161
3J6X|1|1S|C|1162
3J6X|1|1S|A|1163
3J6X|1|1S|G|1164
*
3J6X|1|1S|C|1581
3J6X|1|1S|U|1582
3J6X|1|1S|A|1583
3J6X|1|1S|G|1584
3J6X|1|1S|U|1585
3J6X|1|1S|A|1586
3J6X|1|1S|A|1587
*
3J6X|1|1S|U|1609
3J6X|1|1S|G|1610
3J6X|1|1S|A|1611
3J6X|1|1S|U|1612
3J6X|1|1S|U|1613
3J6X|1|1S|A|1614
3J6X|1|1S|C|1615
3J6X|1|1S|G|1616
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 28
- 40S ribosomal protein S28
- Chain S5
- 40S ribosomal protein S5
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