J3_3J6X_028
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|2S|A|2887, 3J6X|1|2S|U|2888
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_028 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.1693
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|2S|U|2886
3J6X|1|2S|A|2887
3J6X|1|2S|U|2888
3J6X|1|2S|C|2889
*
3J6X|1|2S|G|2914
3J6X|1|2S|U|2915
3J6X|1|2S|U|2916
*
3J6X|1|2S|A|2930
3J6X|1|2S|C|2931
3J6X|1|2S|U|2932
3J6X|1|2S|A|2933
3J6X|1|2S|A|2934
3J6X|1|2S|U|2935
3J6X|1|2S|A|2936
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain 63
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
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