J3_3J6Y_017
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|817, 3J6Y|1|2S|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_017 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.2298
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|U|814
3J6Y|1|2S|G|815
3J6Y|1|2S|A|816
3J6Y|1|2S|A|817
3J6Y|1|2S|C|818
3J6Y|1|2S|U|819
3J6Y|1|2S|A|820
*
3J6Y|1|2S|U|905
3J6Y|1|2S|A|906
3J6Y|1|2S|G|907
*
3J6Y|1|2S|C|923
3J6Y|1|2S|G|924
3J6Y|1|2S|A|925
3J6Y|1|2S|A|926
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 77
- 60S ribosomal protein L37
- Chain L2
- 60S ribosomal protein L2
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