J3_3J6Y_024
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_024 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2352
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|2S|C|1631
3J6Y|1|2S|A|1632
*
3J6Y|1|2S|U|1641
3J6Y|1|2S|A|1642
3J6Y|1|2S|A|1643
3J6Y|1|2S|C|1644
3J6Y|1|2S|U|1645
*
3J6Y|1|2S|A|1810
3J6Y|1|2S|G|1811
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L27
- Chain 74
- 60S ribosomal protein L34
Coloring options: