J3_3J6Y_036
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_036 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.175
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|C|185
3J6Y|1|2S|U|186
3J6Y|1|2S|A|187
3J6Y|1|2S|U|188
3J6Y|1|2S|G|189
*
3J6Y|1|2S|C|205
3J6Y|1|2S|G|206
3J6Y|1|2S|U|207
3J6Y|1|2S|C|208
3J6Y|1|2S|A|209
3J6Y|1|2S|U|210
3J6Y|1|2S|A|211
3J6Y|1|2S|G|212
3J6Y|1|2S|A|213
3J6Y|1|2S|G|214
*
3J6Y|1|2S|C|226
3J6Y|1|2S|G|227
3J6Y|1|2S|U|228
3J6Y|1|2S|G|229
3J6Y|1|2S|U|230
3J6Y|1|2S|G|231
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 66
- 60S ribosomal protein L26
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
Coloring options: